A curated catalogue of human genomic structural variation

Browser Select Tracks Custom Tracks Preferences
- Search
Landmark or Region:
Examples: chr7:71890181..72690180, CFTR, AC108171.3, nsv529033.
Data Source

 Filter variants

The following 2 regions match your request.


Name Type Description Position Match Score
AC108171.3 Clone chrX:151299438..151485145 n/a
AC108171.3 component chrX:151304011..151485145 n/a
<< Back to Browser Show Favorites Only Clear All Favorites
- Tracks
- Breakpoints
Breakpoint annotations from Lam et al (Blue:Gain;Red:Loss;Indigo:Inversion;Brown:Complex) [?] Annotations from Conrad et al [?] Breakpoint annotations from Pang 2012 (Blue:Gain;Red:Loss;Indigo:Inversion;Brown:Complex) [?]
- CGH Arrays
Clones on WGTP Array [?] Clones on SMRT BAC Array [?] NimbleGen 385K Whole Genome Array [?]
Agilent 244k [?] Cytochip V3.0 [?] 
- CN Assays
Life Technologies TaqMan Copy Number Assays [?]  
- Chromosome
Cytogenetic Bands [?] Assembly [?] Gap [?]
- Clones
Clone [?] BAC End Pairs [?] Fosmid End Pairs [?]
- Disease
ISCA Curated clinically relevant regions [?] Disease Genes (OMIM) [?] DECIPHER: Chromosomal Imbalance and Phenotype in Humans (Blue:Gain;Red:Loss;Brown:Complex;Black:NA) [?]
ISCA Clinical cytogenetic testing (Blue:Gain;Red:Loss;Brown:Complex;Black:NA) [?] DECIPHER Genomic Disorders [?] 
- Gene
RefSeq Genes [?] mRNA [?] microRNA [?]
- General
Personal Genome Variants (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inversion;Black:Unknown) [?] SNPs [?] RepeatMasker [?]
dbRIP [?] Recombination hotspots [?] 
- SNP Arrays
AFFY SNP Array 5.0 [?] ILMN HumanHap 550 [?] ILMN HumanHap 1M [?]
AFFY SNP Array 6.0 [?] ILMN HumanHap 650Y [?] 
ILMN HumanHap 300 [?] ILMN Human 660W [?] 
- Segmental Duplications
WSSD duplications [?] UCSC segmental duplications [?] 
- Study Variants
DGV Structural Variants (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inversion;Black:Unknown) [?] DGV Version 1 Structural Variants (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inversion;Black:Unknown) [?] 
Supporting Variants (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inverison;Black:Unknown) [?] Unannotated Studies (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inversion;Black:Unknown) [?] 
- Overview
Chromosome (overview)   

Custom Tracks

[Help with uploading custom tracks]

There are no tracks yet.

Add custom tracks : [From text] [From a URL] [From a file]

Image Width
Highlight feature(s) (feature1 feature2...)
Clear highlighting
  Highlight regions (region1:start..end region2:start..end)
Clear highlighting
  Region Size (bp)

For questions about the data at this site, please contact us