Variant Details

Variant: esv2740654

Internal ID

9974997

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chrY:11680484..11740710	hg38	UCSC Ensembl
Outer	chrY:13801190..13861416	hg19	UCSC Ensembl

Cytoband

Yq11.21

Allele length

Assembly	Allele length
hg38	60227
hg19	60227

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

dgv1331e201

Supporting Variants

essv6888731, essv6950109, essv6828652, essv6696618, essv6678795, essv6946896, essv6801233, essv6921249, essv6917044, essv6868326, essv6883009, essv6880167, essv6888729, essv6917033, essv6824578, essv6756262, essv6713869, essv6835794, essv6816256, essv6895502, essv6917032, essv6868327, essv6967353, essv6780732, essv6946885, essv6925271, essv6843440, essv6678798, essv6892048, essv6895504, essv6685864, essv6895505, essv6839578, essv6674692, essv6832226, essv6678794, essv6925270, essv6696611, essv6820792, essv6678797, essv6880171, essv6816260, essv6846661, essv6812891, essv6747504, essv6880169, essv6871424, essv6828658, essv6801235, essv6763958, essv6685863, essv6937220, essv6947018, essv6950104, essv6780654, essv6763959, essv6839581, essv6921252, essv6696600, essv6828655, essv6824579, essv6729244, essv6843438, essv6874374, essv6828660, essv6807094, essv6917045, essv6925272, essv6871407, essv6738552, essv6696614, essv6871428, essv6868322, essv6883013, essv6901329, essv6967354, essv6863524, essv6780437, essv6967352, essv6937221, essv6888727, essv6828653, essv6807091, essv6828656, essv6674694, essv6801234, essv6780643, essv6871423, essv6713871, essv6871421, essv6892049, essv6832222, essv6807097, essv6780621, essv6925284, essv6883010, essv6780698, essv6763956, essv6832223, essv6895503, essv6967357, essv6763954, essv6729243, essv6967356, essv6780427, essv6868325, essv6832225, essv6678791, essv6888730, essv6678796, essv6947007, essv6756259, essv6901330, essv6868324, essv6828659, essv6946930, essv6885716, essv6713872, essv6696601, essv6824577, essv6812892, essv6925283, essv6885717, essv6863521, essv6937223, essv6713868, essv6744663, essv6713870, essv6883011, essv6780721, essv6824585, essv6824580, essv6810091, essv6747502, essv6917047, essv6898321, essv6816259, essv6832224, essv6810092, essv6843444, essv6674696, essv6835793, essv6967355, essv6937225, essv6917034, essv6885714, essv6946907, essv6925273, essv6917046, essv6696619, essv6863525, essv6835791, essv6921253, essv6901331, essv6807093, essv6685867, essv6835795, essv6868330, essv6810090, essv6843441, essv6947041, essv6747503, essv6729241, essv6950100, essv6892047, essv6846663, essv6820787, essv6863527, essv6898316, essv6685862, essv6921251, essv6917031, essv6868321, essv6696615, essv6674693, essv6685866, essv6863523, essv6696612, essv6871425, essv6937227, essv6885715, essv6950101, essv6946941, essv6780436, essv6780632, essv6950110, essv6880166, essv6820789, essv6780435, essv6674695, essv6946918, essv6843442, essv6839582, essv6871422, essv6925275, essv6917043, essv6674690, essv6898315, essv6888719, essv6807092

Samples

SSM100, SSM008, SSM083, SSM027, SSM024, SSM075, SSM046, SSM079, SSM097, SSM093, SSM050, SSM074, SSM042, SSM088, SSM058, SSM084, SSM090, SSM021, SSM018, SSM096, SSM062, SSM089, SSM017, SSM094, SSM032, SSM003, SSM031, SSM067, SSM085, SSM081, SSM072, SSM082, SSM078, SSM016, SSM053, SSM080, SSM037, SSM077, SSM076, SSM091, SSM055, SSM095, SSM034, SSM099, SSM098

Known Genes

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2740654

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	45
Observed Complex	0
Frequency	n/a