Variant Details

Variant: esv2740646

Internal ID

9974989

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chrY:11532265..11557371	hg38	UCSC Ensembl
Outer	chrY:13687941..13713047	hg19	UCSC Ensembl

Cytoband

Yq11.21

Allele length

Assembly	Allele length
hg38	25107
hg19	25107

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

dgv1330e201

Supporting Variants

essv6812890, essv6888725, essv6801237, essv6678783, essv6674685, essv6877385, essv6937219, essv6812897, essv6885721, essv6807090, essv6871417, essv6828647, essv6807089, essv6729250, essv6729248, essv6747501, essv6843446, essv6763952, essv6937215, essv6843445, essv6729251, essv6925281, essv6895497, essv6780434, essv6696605, essv6898313, essv6812893, essv6668674, essv6950105, essv6696606, essv6780665, essv6868317, essv6713863, essv6828649, essv6937217, essv6756261, essv6892038, essv6946996, essv6871416, essv6810087, essv6807086, essv6713867, essv6967348, essv6863517, essv6747500, essv6901324, essv6868311, essv6883005, essv6810084, essv6839567, essv6846653, essv6925280, essv6885712, essv6843447, essv6885711, essv6843450, essv6685856, essv6678786, essv6950102, essv6832215, essv6967350, essv6678785, essv6685860, essv6832214, essv6696603, essv6892037, essv6967347, essv6678784, essv6925277, essv6674686, essv6898311, essv6812894, essv6895496, essv6832219, essv6868310, essv6892035, essv6871412, essv6883006, essv6674682, essv6780599, essv6744668, essv6729245, essv6898314, essv6744667, essv6696607, essv6877381, essv6843448, essv6888718, essv6828646, essv6868318, essv6846655, essv6921242, essv6780433, essv6863518, essv6816250, essv6839569, essv6839571, essv6835788, essv6816255, essv6921247, essv6898312, essv6888723, essv6756260, essv6744666, essv6863514, essv6877384, essv6801238, essv6874367, essv6871419, essv6807085, essv6824583, essv6835790, essv6846659, essv6832216, essv6780431, essv6901323, essv6871410, essv6835796, essv6950103, essv6828648, essv6874368, essv6871411, essv6780676, essv6892042, essv6839570, essv6839568, essv6780610, essv6678782, essv6901327, essv6832217, essv6780429, essv6901325, essv6846660, essv6807083, essv6780687, essv6839572, essv6874371, essv6835789, essv6780428, essv6713862, essv6901326, essv6868319, essv6917036, essv6895500, essv6780430, essv6729249, essv6756256, essv6925276, essv6921245, essv6917039, essv6874370, essv6678789, essv6807088, essv6846652, essv6839576, essv6747498, essv6883007, essv6921244, essv6868312, essv6807084, essv6763951, essv6674684, essv6810089, essv6744664, essv6816249, essv6946985, essv6868314, essv6756257, essv6892041, essv6828645, essv6880161, essv6946952, essv6892046, essv6892040, essv6674683, essv6888721, essv6925278, essv6839573, essv6810085, essv6801239, essv6812896, essv6921246, essv6880160, essv6895498, essv6892039, essv6871414, essv6895495, essv6816252, essv6812895, essv6832218, essv6883001, essv6888720, essv6678787, essv6696608, essv6871415, essv6888717, essv6892036, essv6824582, essv6738550, essv6846657, essv6901322, essv6738551, essv6950107, essv6828650, essv6674688, essv6820785, essv6729246, essv6921243, essv6901320, essv6810086, essv6877383, essv6713866, essv6880163, essv6883003, essv6946963, essv6843449, essv6801236, essv6888724, essv6877382, essv6868313, essv6816251, essv6685859, essv6801240, essv6917035, essv6883002, essv6820783, essv6839577, essv6967349, essv6917042, essv6871413, essv6696602, essv6871408, essv6846658, essv6917037, essv6801241, essv6917038, essv6885719, essv6824581, essv6892045, essv6820784, essv6885713, essv6685857, essv6756258, essv6937213, essv6874372, essv6863515, essv6713864, essv6868315, essv6835786, essv6863516, essv6937216, essv6898318, essv6880162, essv6937214, essv6729247, essv6835797

Samples

SSM100, SSM008, SSM083, SSM027, SSM024, SSM075, SSM046, SSM079, SSM097, SSM093, SSM050, SSM074, SSM042, SSM088, SSM058, SSM092, SSM084, SSM090, SSM021, SSM018, SSM096, SSM062, SSM089, SSM017, SSM094, SSM032, SSM003, SSM031, SSM067, SSM085, SSM081, SSM072, SSM082, SSM078, SSM016, SSM053, SSM080, SSM037, SSM077, SSM076, SSM091, SSM055, SSM095, SSM034, SSM099, SSM098, SSM030

Known Genes

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

esv2740646

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	47
Observed Complex	0
Frequency	n/a