Genomic Variants in Human Genome (Build GRCh37: Feb. 2009, hg19): 50.9 kbp from chr3:167,401,695..167,452,594

Breakpoints

All on All off

Breakpoint annotations from Lam et al (Blue:Gain;Red:Loss;Indigo:Inversion;Brown:Complex) [?]

Annotations from Conrad et al [?]

Breakpoint annotations from Pang 2012 (Blue:Gain;Red:Loss;Indigo:Inversion;Brown:Complex) [?]

CGH Arrays

All on All off

Agilent 244k [?]

Clones on SMRT BAC Array [?]

CN Assays

All on All off

Life Technologies TaqMan Copy Number Assays [?]

Chromosome

All on All off

Cytogenetic Bands [?]

Assembly [?]

Gap [?]

Clones

All on All off

BAC End Pairs [?]

Fosmid End Pairs [?]

Disease

All on All off

ISCA Curated clinically relevant regions [?]	Disease Genes (OMIM) [?]	DECIPHER: Chromosomal Imbalance and Phenotype in Humans (Blue:Gain;Red:Loss;Brown:Complex;Black:NA) [?]
ISCA Clinical cytogenetic testing (Blue:Gain;Red:Loss;Brown:Complex;Black:NA) [?]	DECIPHER Genomic Disorders [?]

Gene

All on All off

RefSeq Genes [?]

mRNA [?]

microRNA [?]

General

All on All off

Personal Genome Variants (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inversion;Black:Unknown) [?]	SNPs [?]
dbRIP [?]	RepeatMasker [?]

SNP Arrays

All on All off

Segmental Duplications

All on All off

UCSC segmental duplications [?]

Study Variants

All on All off

DGV Structural Variants (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inversion;Black:Unknown) [?]	Unannotated Studies (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inversion;Black:Unknown) [?]	DGV Gold Standard Variants (blue=Gain; red=Loss; brown=Gain+Loss) [?]
Supporting Variants (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inverison;Black:Unknown) [?]	Nat. Rev. Gen. CNV Map - Inclusive (blue=Gain; red=Loss; brown=Gain+Loss) [?]	OPGP Affymetrix CytoHD Variants (blue=Gain; red=Loss; solidbox=AFFY_FILTER; solidline=MULTI_ALGO; dashedline=ONLY_CHAS) [?]
DGV Version 1 Structural Variants (Blue:Gain;Red:Loss;Brown:Complex;Purple:Inversion;Black:Unknown) [?]	Nat. Rev. Gen. CNV Map - Stringent (blue=Gain; red=Loss; brown=Gain+Loss) [?]

Overview

All on All off

Chromosome (overview)

Show grid	Image Width 600 760 980 1240	Highlight feature(s) (feature1 feature2...) Clear highlighting
Cache tracks		Highlight regions (region1:start..end region2:start..end) Clear highlighting
Show tooltips		Region Size (bp)

Landmark or Region: Examples: chr7:71890181..72690180, CFTR, AC108171.3, nsv529033.
Data Source	Scroll/Zoom: Flip

Custom Tracks