A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv8784



Internal ID15500010
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr11:5763253..5788548hg38UCSC Ensembl
Outerchr11:5784483..5809778hg19UCSC Ensembl
Outerchr11:5741059..5766354hg18UCSC Ensembl
Outerchr11:5741059..5766354hg17UCSC Ensembl
Cytoband11p15.4
Allele length
AssemblyAllele length
hg3825296
hg1925296
hg1825296
hg1725296
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv17921, nssv22051, nssv19834, nssv19546, nssv18932, nssv19670, nssv18215, nssv22302, nssv22819, nssv20207, nssv20039, nssv20349, nssv19863, nssv18142, nssv22033, nssv19566, nssv23301, nssv19526, nssv19945, nssv19014, nssv19878, nssv22706, nssv22574, nssv25031, nssv20617, nssv19815, nssv18139, nssv17770, nssv20848, nssv20618
SamplesNA12802, NA18975, NA19173, NA10839, NA10847, NA18972, NA18517, NA19144, NA18860, NA07029, NA10863, NA12155, NA18563, NA12740, NA07048, NA18537, NA18572, NA18502, NA12872, NA18504, NA18564, NA18942, NA19221, NA18552, NA19132, NA11830, NA19240, NA18853, NA19007, NA18980
Known GenesOR52N1, OR52N5
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nsv8784
Frequency
Sample Size31
Observed Gain29
Observed Loss1
Observed Complex0
Frequencyn/a


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