Variant Details

Variant: nsv8636

Internal ID

15846548

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Outer	chr10:46677594..49272522	hg19	UCSC Ensembl
Outer	chr10:46097600..48942528	hg18	UCSC Ensembl
Outer	chr10:46097600..48942528	hg17	UCSC Ensembl

Cytoband

10q11.21

Allele length

Assembly	Allele length
hg19	2594929
hg18	2844929
hg17	2844929

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv18304, nssv16811, nssv23815, nssv18646, nssv21241, nssv19337, nssv17602, nssv16991, nssv18828, nssv17255, nssv19718, nssv19687, nssv18844, nssv18264, nssv20248, nssv21953, nssv18500, nssv17332, nssv19477, nssv17141, nssv18710, nssv18475, nssv17874, nssv19207, nssv18410, nssv21012, nssv21132, nssv18937, nssv18784, nssv18024, nssv21861, nssv16999, nssv16909, nssv19469, nssv19898, nssv17170, nssv21831, nssv20881, nssv17972, nssv20018, nssv19065, nssv18236, nssv16961, nssv19057, nssv18385, nssv17165, nssv16901, nssv20851, nssv17200, nssv17119, nssv21983, nssv19928, nssv19297, nssv18364, nssv18798, nssv21921, nssv17140, nssv23869, nssv17231, nssv16939, nssv16781, nssv18565, nssv23923, nssv18918, nssv18595, nssv19499, nssv19248, nssv18680, nssv20701, nssv17029, nssv19657, nssv18625, nssv17171, nssv16841, nssv21717, nssv18676, nssv21211, nssv18176, nssv21331, nssv17359, nssv21121, nssv22133, nssv18708, nssv19367, nssv19177, nssv17051, nssv18865, nssv23842, nssv16871, nssv18907, nssv18966, nssv23734, nssv22161, nssv18975, nssv20551, nssv17392, nssv18144, nssv21271, nssv18590, nssv23788, nssv20641, nssv18830, nssv18566, nssv18858, nssv17135, nssv18925, nssv19027, nssv18356, nssv20398, nssv18694, nssv23648, nssv18386, nssv19359, nssv18740, nssv18296, nssv21891, nssv22163, nssv19327, nssv21361, nssv19387, nssv17994, nssv17329, nssv20911, nssv18706, nssv22073, nssv18274, nssv18978, nssv18415, nssv19379, nssv19229, nssv17882, nssv18997, nssv18204, nssv18835, nssv18877, nssv18620, nssv17942, nssv19838, nssv18454, nssv18885, nssv18955, nssv21222, nssv19125, nssv19035, nssv19958, nssv17375, nssv16931, nssv18805, nssv19128, nssv18206, nssv19868, nssv19269, nssv19717, nssv17904, nssv19173, nssv19278, nssv19188, nssv18626, nssv19808, nssv18724, nssv19218, nssv17912, nssv21674, nssv19267, nssv20338, nssv23896, nssv19357, nssv22281, nssv19307, nssv18560, nssv21162, nssv17435, nssv17285, nssv22131, nssv19117, nssv17934, nssv18146, nssv19289, nssv17201, nssv18604, nssv19319, nssv17572, nssv18536, nssv19537, nssv17512, nssv22041, nssv20821, nssv23950, nssv20731, nssv18814, nssv18664, nssv19988, nssv16691, nssv17225, nssv18530, nssv21061, nssv21001, nssv19024, nssv19203, nssv19447, nssv18616, nssv20791, nssv17059, nssv18800, nssv22311, nssv17345, nssv19015, nssv18054, nssv19627, nssv19449, nssv19144, nssv18470, nssv22191, nssv18506, nssv17195, nssv19259, nssv19158, nssv18985, nssv18174, nssv22043, nssv19389, nssv17239, nssv18964, nssv17209, nssv17844, nssv19237, nssv18934, nssv17482, nssv22341, nssv20108, nssv18326, nssv21151, nssv20491, nssv18416, nssv23761, nssv17315, nssv19155, nssv21951, nssv18715, nssv18678, nssv19114, nssv19008, nssv17362, nssv20971, nssv20278, nssv18738, nssv18544, nssv18514, nssv20581, nssv19005, nssv21711, nssv18685, nssv16721, nssv21644, nssv18904, nssv17452, nssv20308, nssv21042, nssv17021, nssv18574, nssv17299, nssv17269, nssv18650, nssv19597, nssv18847, nssv18745, nssv21102, nssv23536, nssv19778, nssv18476, nssv17290, nssv17260, nssv19409, nssv21192, nssv19567, nssv20611, nssv21031, nssv18895, nssv22193, nssv17350, nssv18994, nssv21741, nssv17542, nssv20671, nssv23592, nssv17495, nssv19204, nssv23564, nssv20461, nssv18394, nssv19349, nssv18648, nssv18796, nssv18505, nssv17261, nssv18618, nssv17272, nssv18948, nssv20941, nssv18915, nssv19068, nssv18736, nssv19559, nssv22011, nssv19199, nssv18484, nssv18888, nssv18266, nssv17465, nssv18596, nssv17320, nssv17230, nssv19777, nssv17964, nssv18535, nssv16969, nssv23620, nssv19299, nssv22013, nssv21687, nssv18634, nssv19507, nssv20521, nssv19054, nssv22221, nssv19329, nssv18874, nssv18860, nssv21747, nssv18855, nssv22401, nssv21801, nssv18655, nssv22071, nssv22371, nssv21981, nssv18334, nssv20368, nssv19147, nssv21181, nssv20863, nssv21301, nssv19038, nssv17179, nssv18967, nssv23676, nssv17149, nssv22251, nssv19174, nssv19529, nssv17302, nssv17111, nssv17852, nssv18234, nssv20048, nssv18945

Samples

NA18502, NA11830, NA18980, NA07029, NA18504, NA12155, NA18563, NA12802, NA18860, NA18942, NA07048, NA10839, NA18975, NA19007, NA10847, NA10863, NA12872, NA18572, NA19221, NA18537, NA18853, NA19132, NA18517, NA18564, NA19240, NA19144, NA12740, NA19173, NA18972, NA18552

Known Genes

AGAP9, ANTXRL, ANTXRLP1, ANXA8, ANXA8L1, ANXA8L2, BMS1P1, BMS1P2, BMS1P5, BMS1P6, CTGLF12P, CTSLP2, FAM21B, FAM25B, FAM25C, FAM25G, FAM35BP, FAM35DP, FRMPD2P1, GDF10, GDF2, GLUD1P7, GPRIN2, HNRNPA1P33, LINC00842, LOC100996758, NPY4R, PTPN20A, PTPN20B, RBP3, SYT15, ZNF488

Method

Oligo aCGH

Analysis

Statistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2

Platform

Agilent-015686 Custom Human 244K CGH Microarray

Comments

Reference

Perry_et_al_2008

Pubmed ID

18304495

Accession Number(s)

nsv8636

Frequency

Sample Size	31
Observed Gain	6
Observed Loss	29
Observed Complex	0
Frequency	n/a