Variant DetailsVariant: nsv834676Internal ID | 16111859 | Landmark | | Location Information | | Cytoband | 3p21.31 | Allele length | Assembly | Allele length | hg38 | 220650 | hg19 | 220650 | hg18 | 220650 | hg17 | 220650 |
| Variant Type | CNV gain+loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv1442761, nssv1442771, nssv1442756, nssv1442770, nssv1442769, nssv1442760, nssv1442757, nssv1442758, nssv1442764, nssv1442759, nssv1442766, nssv1442765, nssv1442762, nssv1442768, nssv1442767, nssv1442755 | Samples | | Known Genes | CDCP1, CLEC3B, EXOSC7, ZDHHC3 | Method | BAC aCGH | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | Platform | GPL2616 | Comments | | Reference | Wong_et_al_2007 | Pubmed ID | 17160897 | Accession Number(s) | nsv834676
| Frequency | Sample Size | 95 | Observed Gain | 7 | Observed Loss | 9 | Observed Complex | 0 | Frequency | n/a |
|
|