Variant DetailsVariant: nsv834422Internal ID | 16111605 | Landmark | | Location Information | | Cytoband | 2q23.3 | Allele length | Assembly | Allele length | hg38 | 153622 | hg19 | 153622 | hg18 | 153622 | hg17 | 153622 |
| Variant Type | CNV gain | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv1442311, nssv1442323, nssv1442314, nssv1442319, nssv1442308, nssv1442322, nssv1442305, nssv1442309, nssv1442301, nssv1442326, nssv1442317, nssv1442303, nssv1442302, nssv1442316, nssv1442306, nssv1442321, nssv1442310, nssv1442324, nssv1442313, nssv1442315, nssv1442320, nssv1442304, nssv1442325, nssv1442312 | Samples | | Known Genes | ARL6IP6 | Method | BAC aCGH | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | Platform | GPL2616 | Comments | | Reference | Wong_et_al_2007 | Pubmed ID | 17160897 | Accession Number(s) | nsv834422
| Frequency | Sample Size | 95 | Observed Gain | 24 | Observed Loss | 0 | Observed Complex | 0 | Frequency | n/a |
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