A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv834329



Internal ID16111512
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr2:109976032..110134607hg38UCSC Ensembl
Outerchr2:110733609..110892184hg19UCSC Ensembl
Outerchr2:110090898..110249473hg18UCSC Ensembl
Outerchr2:110090984..110249559hg17UCSC Ensembl
Cytoband2q13
Allele length
AssemblyAllele length
hg38158576
hg19158576
hg18158576
hg17158576
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1442143, nssv1442142
Samples
Known GenesLINC01123, MALL, MIR4267, MIR4436B1, MIR4436B2, NPHP1
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv834329
Frequency
Sample Size95
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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