A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv834193



Internal ID16111376
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr22:37997329..38172090hg38UCSC Ensembl
Outerchr22:38393336..38568097hg19UCSC Ensembl
Outerchr22:36723282..36898043hg18UCSC Ensembl
Outerchr22:36717836..36892597hg17UCSC Ensembl
Cytoband22q13.1
Allele length
AssemblyAllele length
hg38174762
hg19174762
hg18174762
hg17174762
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1456122, nssv1456118, nssv1456121, nssv1456120, nssv1456119
Samples
Known GenesBAIAP2L2, PICK1, PLA2G6, SLC16A8
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv834193
Frequency
Sample Size95
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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