Variant DetailsVariant: nsv834032Internal ID | 16111215 | Landmark | | Location Information | | Cytoband | 20q13.33 | Allele length | Assembly | Allele length | hg38 | 94165 | hg19 | 94165 | hg18 | 94165 | hg17 | 94165 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv1455326, nssv1455320, nssv1455311, nssv1455310, nssv1455299, nssv1455325, nssv1455316, nssv1455306, nssv1455304, nssv1455300, nssv1455327, nssv1455315, nssv1455323, nssv1455324, nssv1455305, nssv1455309, nssv1455308, nssv1455328, nssv1455312, nssv1455296, nssv1455317, nssv1455319, nssv1455301, nssv1455314, nssv1455318, nssv1455298, nssv1455322, nssv1455303, nssv1455321, nssv1455313, nssv1455307, nssv1455297, nssv1455302 | Samples | | Known Genes | ARFGAP1, BIRC7, COL20A1, FLJ16779, MIR3196, MIR4326, NKAIN4, YTHDF1 | Method | BAC aCGH | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | Platform | GPL2616 | Comments | | Reference | Wong_et_al_2007 | Pubmed ID | 17160897 | Accession Number(s) | nsv834032
| Frequency | Sample Size | 95 | Observed Gain | 0 | Observed Loss | 33 | Observed Complex | 0 | Frequency | n/a |
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