A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv834000



Internal ID16111183
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr20:50037107..50163145hg38UCSC Ensembl
Outerchr20:48653644..48779682hg19UCSC Ensembl
Outerchr20:48087051..48213089hg18UCSC Ensembl
Outerchr20:48087051..48213089hg17UCSC Ensembl
Cytoband20q13.13
Allele length
AssemblyAllele length
hg38126039
hg19126039
hg18126039
hg17126039
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1455125, nssv1455123, nssv1455124
Samples
Known GenesTMEM189, TMEM189-UBE2V1, TRERNA1, UBE2V1
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv834000
Frequency
Sample Size95
Observed Gain2
Observed Loss1
Observed Complex0
Frequencyn/a


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