A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833875



Internal ID16111058
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:52708082..52888206hg38UCSC Ensembl
Outerchr19:53211335..53391459hg19UCSC Ensembl
Outerchr19:57903147..58083271hg18UCSC Ensembl
Outerchr19:57903147..58083271hg17UCSC Ensembl
Cytoband19q13.41
Allele length
AssemblyAllele length
hg38180125
hg19180125
hg18180125
hg17180125
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1454853, nssv1454854
Samples
Known GenesZNF28, ZNF320, ZNF468, ZNF600, ZNF611
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833875
Frequency
Sample Size95
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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