Variant DetailsVariant: nsv833739 | Internal ID | 16457608 | | Landmark | | | Location Information | | | Cytoband | 19p13.2 | | Allele length | | Assembly | Allele length | | hg38 | 41648 | | hg19 | 41648 | | hg18 | 41648 | | hg17 | 41648 |
| | Variant Type | CNV gain+loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | nssv1454461, nssv1454454, nssv1454486, nssv1454481, nssv1454480, nssv1454453, nssv1454446, nssv1454478, nssv1454464, nssv1454445, nssv1454472, nssv1454467, nssv1454489, nssv1454484, nssv1454473, nssv1454448, nssv1454482, nssv1454476, nssv1454462, nssv1454452, nssv1454468, nssv1454483, nssv1454460, nssv1454475, nssv1454450, nssv1454471, nssv1454444, nssv1454463, nssv1454447, nssv1454459, nssv1454449, nssv1454466, nssv1454487, nssv1454458, nssv1454474, nssv1454485, nssv1454457, nssv1454477, nssv1454465, nssv1454451, nssv1454469, nssv1454455, nssv1454470, nssv1454488, nssv1454479, nssv1454456 | | Samples | | | Known Genes | ZNF558 | | Method | BAC aCGH | | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | | Platform | GPL2616 | | Comments | | | Reference | Wong_et_al_2007 | | Pubmed ID | 17160897 | | Accession Number(s) | nsv833739
| | Frequency | | Sample Size | 95 | | Observed Gain | 45 | | Observed Loss | 1 | | Observed Complex | 0 | | Frequency | n/a |
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