A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833737



Internal ID16457606
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:8709740..8742670hg38UCSC Ensembl
Outerchr19:8820094..8853315hg19UCSC Ensembl
Outerchr19:8681094..8714315hg18UCSC Ensembl
Outerchr19:8681094..8714315hg17UCSC Ensembl
Cytoband19p13.2
Allele length
AssemblyAllele length
hg3832931
hg1933222
hg1833222
hg1733222
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1454402, nssv1454399, nssv1454401, nssv1454400, nssv1454358, nssv1454411, nssv1454370, nssv1454390, nssv1454356, nssv1454392, nssv1454378, nssv1454408, nssv1454406, nssv1454394, nssv1454361, nssv1454398, nssv1454413, nssv1454393, nssv1454389, nssv1454381, nssv1454388, nssv1454410, nssv1454391, nssv1454364, nssv1454404, nssv1454372, nssv1454371, nssv1454395, nssv1454414, nssv1454412, nssv1454366, nssv1454363, nssv1454396, nssv1454373, nssv1454365, nssv1454359, nssv1454387, nssv1454382, nssv1454409, nssv1454384, nssv1454377, nssv1454367, nssv1454403, nssv1454376, nssv1454397, nssv1454374, nssv1454369, nssv1454375, nssv1454362, nssv1454405, nssv1454360, nssv1454383, nssv1454379, nssv1454380, nssv1454386, nssv1454407, nssv1454368, nssv1454415, nssv1454385, nssv1454357
Samples
Known GenesOR2Z1
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833737
Frequency
Sample Size95
Observed Gain58
Observed Loss2
Observed Complex0
Frequencyn/a


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