A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833710



Internal ID16110893
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:2977776..3158043hg38UCSC Ensembl
Outerchr19:2977774..3158041hg19UCSC Ensembl
Outerchr19:2928774..3109041hg18UCSC Ensembl
Outerchr19:2928774..3109041hg17UCSC Ensembl
Cytoband19p13.3
Allele length
AssemblyAllele length
hg38180268
hg19180268
hg18180268
hg17180268
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv47n68
Supporting Variantsnssv1454210, nssv1454215, nssv1454213, nssv1454211, nssv1454212, nssv1454214, nssv1454216
Samples
Known GenesAES, GNA11, GNA15, MIR548AZ, TLE2, TLE6
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833710
Frequency
Sample Size95
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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