A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833707



Internal ID16110890
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:2187092..2372223hg38UCSC Ensembl
Outerchr19:2187091..2372221hg19UCSC Ensembl
Outerchr19:2138091..2323221hg18UCSC Ensembl
Outerchr19:2138091..2323221hg17UCSC Ensembl
Cytoband19p13.3
Allele length
AssemblyAllele length
hg38185132
hg19185131
hg18185131
hg17185131
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1454183, nssv1454194, nssv1454185, nssv1454182, nssv1454189, nssv1454184, nssv1454180, nssv1454179, nssv1454193, nssv1454181, nssv1454191, nssv1454187, nssv1454192, nssv1454190, nssv1454186, nssv1454188, nssv1454195
Samples
Known GenesAMH, C19orf35, DOT1L, JSRP1, LINGO3, LSM7, MIR1227, MIR4321, MIR6789, OAZ1, PLEKHJ1, SF3A2, SPPL2B
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833707
Frequency
Sample Size95
Observed Gain0
Observed Loss17
Observed Complex0
Frequencyn/a


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