A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833639



Internal ID16110822
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr18:46846400..47026348hg38UCSC Ensembl
Outerchr18:44426363..44552719hg19UCSC Ensembl
Outerchr18:42680361..42806717hg18UCSC Ensembl
Outerchr18:42680361..42806717hg17UCSC Ensembl
Cytoband18q21.1
Allele length
AssemblyAllele length
hg38179949
hg19126357
hg18126357
hg17126357
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1453998, nssv1453996, nssv1453997, nssv1453995, nssv1453994, nssv1453993
Samples
Known GenesKATNAL2, PIAS2, TCEB3C, TCEB3CL, TCEB3CL2
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833639
Frequency
Sample Size95
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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