Variant DetailsVariant: nsv833564![](http://dgv.tcag.ca/gb2/gbrowse_img/dgv2_hg18/?name=chr17:76603108..76752449;width=800;overview=1) Internal ID | 16110747 | Landmark | | Location Information | | Cytoband | 17q25.3 | Allele length | Assembly | Allele length | hg38 | 149342 | hg19 | 149342 | hg18 | 149342 | hg17 | 149342 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv1453770, nssv1453771, nssv1453781, nssv1453769, nssv1453780, nssv1453773, nssv1453778, nssv1453779, nssv1453774, nssv1453775, nssv1453776, nssv1453777, nssv1453772 | Samples | | Known Genes | AATK, BAIAP2, BAIAP2-AS1, MIR1250, MIR3065, MIR338, MIR657 | Method | BAC aCGH | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | Platform | GPL2616 | Comments | | Reference | Wong_et_al_2007 | Pubmed ID | 17160897 | Accession Number(s) | nsv833564
| Frequency | Sample Size | 95 | Observed Gain | 0 | Observed Loss | 13 | Observed Complex | 0 | Frequency | n/a |
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