A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833473



Internal ID16110656
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr17:49383665..49545926hg38UCSC Ensembl
Outerchr17:47461027..47623288hg19UCSC Ensembl
Outerchr17:44816026..44978287hg18UCSC Ensembl
Outerchr17:44816026..44978287hg17UCSC Ensembl
Cytoband17q21.33
Allele length
AssemblyAllele length
hg38162262
hg19162262
hg18162262
hg17162262
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1453557, nssv1453558, nssv1453556
Samples
Known GenesLOC100288866, MIR6165, NGFR, PHB
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833473
Frequency
Sample Size95
Observed Gain1
Observed Loss2
Observed Complex0
Frequencyn/a


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