Variant DetailsVariant: nsv833463 Internal ID | 16110646 | Landmark | | Location Information | | Cytoband | 17q21.31 | Allele length | Assembly | Allele length | hg38 | 175541 | hg19 | 175541 | hg18 | 175438 | hg17 | 175438 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv1453496, nssv1453482, nssv1453460, nssv1453476, nssv1453464, nssv1453505, nssv1453478, nssv1453470, nssv1453466, nssv1453469, nssv1453503, nssv1453459, nssv1453485, nssv1453472, nssv1453506, nssv1453465, nssv1453477, nssv1453491, nssv1453463, nssv1453475, nssv1453490, nssv1453473, nssv1453488, nssv1453480, nssv1453468, nssv1453479, nssv1453481, nssv1453499, nssv1453493, nssv1453461, nssv1453489, nssv1453502, nssv1453471, nssv1453497, nssv1453474, nssv1453467, nssv1453487, nssv1453500, nssv1453498, nssv1453483, nssv1453504, nssv1453462, nssv1453501, nssv1453494, nssv1453484, nssv1453495, nssv1453492, nssv1453486 | Samples | | Known Genes | ARL17A, ARL17B, LRRC37A2, NSFP1 | Method | BAC aCGH | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | Platform | GPL2616 | Comments | | Reference | Wong_et_al_2007 | Pubmed ID | 17160897 | Accession Number(s) | nsv833463
| Frequency | Sample Size | 95 | Observed Gain | 0 | Observed Loss | 48 | Observed Complex | 0 | Frequency | n/a |
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