A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833335



Internal ID9424186
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr17:1713955..1827844hg38UCSC Ensembl
Outerchr17:1617249..1731138hg19UCSC Ensembl
Outerchr17:1563999..1677888hg18UCSC Ensembl
Outerchr17:1563999..1677888hg17UCSC Ensembl
Cytoband17p13.3
Allele length
AssemblyAllele length
hg38113890
hg19113890
hg18113890
hg17113890
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1453052, nssv1453051
Samples
Known GenesMIR22, MIR22HG, SERPINF1, SERPINF2, SMYD4, WDR81
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833335
Frequency
Sample Size95
Observed Gain1
Observed Loss1
Observed Complex0
Frequencyn/a


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