A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833303



Internal ID16457172
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr2:6048972..6076477hg38UCSC Ensembl
Outerchr2:6189104..6216609hg19UCSC Ensembl
Outerchr2:6106555..6134060hg18UCSC Ensembl
Outerchr2:6139702..6167207hg17UCSC Ensembl
Cytoband2p25.2
Allele length
AssemblyAllele length
hg3827506
hg1927506
hg1827506
hg1727506
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1441779, nssv1441778, nssv1441780, nssv1441781
Samples
Known Genes
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833303
Frequency
Sample Size95
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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