A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833160



Internal ID16110343
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr16:18361552..18670902hg38UCSC Ensembl
Outerchr16:18455409..18682224hg19UCSC Ensembl
Outerchr16:18362910..18589725hg18UCSC Ensembl
Outerchr16:18362910..18589725hg17UCSC Ensembl
Cytoband16p12.3
Allele length
AssemblyAllele length
hg38309351
hg19226816
hg18226816
hg17226816
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1452370, nssv1452374, nssv1452369, nssv1452371, nssv1452367, nssv1452372, nssv1452378, nssv1452380, nssv1452375, nssv1452368, nssv1452376, nssv1452377, nssv1452366, nssv1452373, nssv1452379
Samples
Known GenesABCC6P1, MIR3179-1, MIR3179-2, MIR3179-3, MIR3180-1, MIR3180-2, MIR3180-3, MIR6770-2, NOMO2
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833160
Frequency
Sample Size95
Observed Gain15
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer