A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833120



Internal ID16110303
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr16:1893102..1980660hg38UCSC Ensembl
Outerchr16:1943103..2030661hg19UCSC Ensembl
Outerchr16:1883104..1970662hg18UCSC Ensembl
Outerchr16:1883104..1970662hg17UCSC Ensembl
Cytoband16p13.3
Allele length
AssemblyAllele length
hg3887559
hg1987559
hg1887559
hg1787559
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1452194, nssv1452199, nssv1452205, nssv1452206, nssv1452181, nssv1452195, nssv1452204, nssv1452183, nssv1452203, nssv1452191, nssv1452182, nssv1452207, nssv1452208, nssv1452185, nssv1452187, nssv1452189, nssv1452192, nssv1452186, nssv1452188, nssv1452198, nssv1452184, nssv1452197, nssv1452196, nssv1452202, nssv1452190, nssv1452200, nssv1452201, nssv1452180, nssv1452193
Samples
Known GenesHS3ST6, MSRB1, NDUFB10, NOXO1, RNF151, RPL3L, RPS2, SNHG9, SNORA10, SNORA64, SNORA78, TBL3
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833120
Frequency
Sample Size95
Observed Gain0
Observed Loss29
Observed Complex0
Frequencyn/a


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