A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833110



Internal ID16110293
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:101179146..101337388hg38UCSC Ensembl
Outerchr15:101719351..101877593hg19UCSC Ensembl
Outerchr15:99536874..99695116hg18UCSC Ensembl
Outerchr15:99536874..99695116hg17UCSC Ensembl
Cytoband15q26.3
Allele length
AssemblyAllele length
hg38158243
hg19158243
hg18158243
hg17158243
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1452115, nssv1452116
Samples
Known GenesCHSY1, LOC100507472, PCSK6, SNRPA1, VIMP
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833110
Frequency
Sample Size95
Observed Gain1
Observed Loss1
Observed Complex0
Frequencyn/a


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