A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833090



Internal ID16110273
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:90911195..91098519hg38UCSC Ensembl
Outerchr15:91454425..91641749hg19UCSC Ensembl
Outerchr15:89255429..89442753hg18UCSC Ensembl
Outerchr15:89255429..89442753hg17UCSC Ensembl
Cytoband15q26.1
Allele length
AssemblyAllele length
hg38187325
hg19187325
hg18187325
hg17187325
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1452076, nssv1452078, nssv1452077
Samples
Known GenesHDDC3, MAN2A2, PRC1, PRC1-AS1, RCCD1, UNC45A, VPS33B
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833090
Frequency
Sample Size95
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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