A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833086



Internal ID16110269
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:89275748..89437378hg38UCSC Ensembl
Outerchr15:89818979..89980609hg19UCSC Ensembl
Outerchr15:87619983..87781613hg18UCSC Ensembl
Outerchr15:87619983..87781613hg17UCSC Ensembl
Cytoband15q26.1
Allele length
AssemblyAllele length
hg38161631
hg19161631
hg18161631
hg17161631
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1452072
Samples
Known GenesFANCI, LINC00925, MIR6766, MIR9-3, POLG
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833086
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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