A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833055



Internal ID9423906
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:74696003..74873947hg38UCSC Ensembl
Outerchr15:74988344..75166288hg19UCSC Ensembl
Outerchr15:72775397..72953341hg18UCSC Ensembl
Outerchr15:72775397..72953341hg17UCSC Ensembl
Cytoband15q24.1
Allele length
AssemblyAllele length
hg38177945
hg19177945
hg18177945
hg17177945
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1452022
Samples
Known GenesCPLX3, CSK, CYP1A1, CYP1A2, EDC3, LMAN1L, MIR4513, MIR6882, SCAMP2, ULK3
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833055
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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