A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv833014



Internal ID16456883
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:54806985..54957293hg38UCSC Ensembl
Outerchr15:55099183..55249491hg19UCSC Ensembl
Outerchr15:52886475..53036783hg18UCSC Ensembl
Outerchr15:52886475..53036783hg17UCSC Ensembl
Cytoband15q21.3
Allele length
AssemblyAllele length
hg38150309
hg19150309
hg18150309
hg17150309
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1451966, nssv1451964, nssv1451967, nssv1451965, nssv1451963
Samples
Known Genes
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv833014
Frequency
Sample Size95
Observed Gain3
Observed Loss2
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer