A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv832951



Internal ID16110134
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:30839036..31012266hg38UCSC Ensembl
Outerchr15:31131239..31304469hg19UCSC Ensembl
Outerchr15:28918531..29091761hg18UCSC Ensembl
Outerchr15:28918531..29091761hg17UCSC Ensembl
Cytoband15q13.2
Allele length
AssemblyAllele length
hg38173231
hg19173231
hg18173231
hg17173231
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1451817, nssv1451811, nssv1451819, nssv1451814, nssv1451810, nssv1451818, nssv1451820, nssv1451812, nssv1451813, nssv1451815, nssv1451816
Samples
Known GenesFAN1, MIR7976, MTMR10, TRPM1
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv832951
Frequency
Sample Size95
Observed Gain0
Observed Loss11
Observed Complex0
Frequencyn/a


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