A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv832948



Internal ID16110131
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:30286916..30506137hg38UCSC Ensembl
Outerchr15:30579119..30798340hg19UCSC Ensembl
Outerchr15:28366411..28585632hg18UCSC Ensembl
Outerchr15:28366411..28585632hg17UCSC Ensembl
Cytoband15q13.2
Allele length
AssemblyAllele length
hg38219222
hg19219222
hg18219222
hg17219222
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1451716, nssv1451717, nssv1451719, nssv1451715, nssv1451718
Samples
Known GenesCHRFAM7A, LOC101059918
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv832948
Frequency
Sample Size95
Observed Gain1
Observed Loss4
Observed Complex0
Frequencyn/a


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