A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv832908



Internal ID16456777
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:20433147..20583264hg38UCSC Ensembl
Outerchr15:20638400..20788587hg19UCSC Ensembl
Outerchr15:18898414..19048601hg18UCSC Ensembl
Outerchr15:18898414..19048601hg17UCSC Ensembl
Cytoband15q11.1
Allele length
AssemblyAllele length
hg38150118
hg19150188
hg18150188
hg17150188
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1451421, nssv1451420
Samples
Known GenesGOLGA6L6, GOLGA8CP, HERC2P3
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv832908
Frequency
Sample Size95
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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