A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv832716



Internal ID16109899
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr13:108425141..108594609hg38UCSC Ensembl
Outerchr13:109077489..109246957hg19UCSC Ensembl
Outerchr13:107875490..108044958hg18UCSC Ensembl
Outerchr13:107875490..108044958hg17UCSC Ensembl
Cytoband13q33.3
Allele length
AssemblyAllele length
hg38169469
hg19169469
hg18169469
hg17169469
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1450476, nssv1450477, nssv1450478
Samples
Known Genes
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv832716
Frequency
Sample Size95
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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