A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv832619



Internal ID16456488
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr13:57129211..57301684hg38UCSC Ensembl
Outerchr13:57703345..57875818hg19UCSC Ensembl
Outerchr13:56601346..56773819hg18UCSC Ensembl
Outerchr13:56601346..56773819hg17UCSC Ensembl
Cytoband13q21.1
Allele length
AssemblyAllele length
hg38172474
hg19172474
hg18172474
hg17172474
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1450267, nssv1450266, nssv1450269, nssv1450268
Samples
Known GenesPRR20A, PRR20B, PRR20C, PRR20D, PRR20E
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv832619
Frequency
Sample Size95
Observed Gain4
Observed Loss0
Observed Complex0
Frequencyn/a


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