A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv832497



Internal ID16109680
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr12:101667198..101861862hg38UCSC Ensembl
Outerchr12:102060976..102255640hg19UCSC Ensembl
Outerchr12:100585107..100779771hg18UCSC Ensembl
Outerchr12:100563444..100758108hg17UCSC Ensembl
Cytoband12q23.2
Allele length
AssemblyAllele length
hg38194665
hg19194665
hg18194665
hg17194665
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1449980
Samples
Known GenesCHPT1, GNPTAB, MYBPC1, SYCP3
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv832497
Frequency
Sample Size95
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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