A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv832471



Internal ID16109654
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr12:82185174..82361581hg38UCSC Ensembl
Outerchr12:82578953..82755360hg19UCSC Ensembl
Outerchr12:81103084..81279491hg18UCSC Ensembl
Outerchr12:81081421..81257828hg17UCSC Ensembl
Cytoband12q21.31
Allele length
AssemblyAllele length
hg38176408
hg19176408
hg18176408
hg17176408
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1449927, nssv1449921, nssv1449931, nssv1449933, nssv1449929, nssv1449930, nssv1449922, nssv1449924, nssv1449926, nssv1449932, nssv1449925, nssv1449934, nssv1449923
Samples
Known GenesCCDC59, METTL25
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv832471
Frequency
Sample Size95
Observed Gain0
Observed Loss13
Observed Complex0
Frequencyn/a


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