A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv832264



Internal ID16109447
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr11:108578886..108752993hg38UCSC Ensembl
Outerchr11:108449613..108623720hg19UCSC Ensembl
Outerchr11:107954823..108128930hg18UCSC Ensembl
Outerchr11:107954823..108128930hg17UCSC Ensembl
Cytoband11q22.3
Allele length
AssemblyAllele length
hg38174108
hg19174108
hg18174108
hg17174108
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1449478, nssv1449467, nssv1449476, nssv1449472, nssv1449469, nssv1449471, nssv1449475, nssv1449477, nssv1449466, nssv1449474, nssv1449468, nssv1449470
Samples
Known GenesDDX10, EXPH5
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv832264
Frequency
Sample Size95
Observed Gain11
Observed Loss1
Observed Complex0
Frequencyn/a


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