A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv832198



Internal ID16109381
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr11:69608914..69773710hg38UCSC Ensembl
Outerchr11:69423682..69588478hg19UCSC Ensembl
Outerchr11:69132863..69297659hg18UCSC Ensembl
Outerchr11:69132863..69297659hg17UCSC Ensembl
Cytoband11q13.2
Allele length
AssemblyAllele length
hg38164797
hg19164797
hg18164797
hg17164797
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv16n68
Supporting Variantsnssv1449328, nssv1449330, nssv1449326, nssv1449331, nssv1449327, nssv1449332
Samples
Known GenesCCND1, FGF19, FGF4, ORAOV1
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv832198
Frequency
Sample Size95
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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