A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv832045



Internal ID16109228
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr11:969785..1135259hg38UCSC Ensembl
Outerchr11:969785..1129167hg19UCSC Ensembl
Outerchr11:959785..1119167hg18UCSC Ensembl
Outerchr11:959785..1119167hg17UCSC Ensembl
Cytoband11p15.5
Allele length
AssemblyAllele length
hg38165475
hg19159383
hg18159383
hg17159383
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1448948, nssv1448947, nssv1448955, nssv1448954, nssv1448946, nssv1448957, nssv1448952, nssv1448959, nssv1448960, nssv1448958, nssv1448949, nssv1448951, nssv1448964, nssv1448953, nssv1448956, nssv1448963
Samples
Known GenesAP2A2, MUC2, MUC6
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv832045
Frequency
Sample Size95
Observed Gain1
Observed Loss15
Observed Complex0
Frequencyn/a


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