A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv832041



Internal ID16109224
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:133390168..133548869hg38UCSC Ensembl
Outerchr10:135203672..135362373hg19UCSC Ensembl
Outerchr10:135053662..135212363hg18UCSC Ensembl
Outerchr10:135092553..135251254hg17UCSC Ensembl
Cytoband10q26.3
Allele length
AssemblyAllele length
hg38158702
hg19158702
hg18158702
hg17158702
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1448926
Samples
Known GenesCYP2E1, MTG1, PAOX, SCART1, SPRN
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv832041
Frequency
Sample Size95
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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