A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv832036



Internal ID16109219
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:133089509..133368232hg38UCSC Ensembl
Outerchr10:134903013..135181736hg19UCSC Ensembl
Outerchr10:134753003..135031726hg18UCSC Ensembl
Outerchr10:134791894..135070617hg17UCSC Ensembl
Cytoband10q26.3
Allele length
AssemblyAllele length
hg38278724
hg19278724
hg18278724
hg17278724
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1448900, nssv1448902, nssv1448904, nssv1448897, nssv1448893, nssv1448896, nssv1448905, nssv1448892, nssv1448901, nssv1448894, nssv1448899, nssv1448903, nssv1448898
Samples
Known GenesADAM8, CALY, ECHS1, FUOM, GPR123, KNDC1, MIR202, MIR202HG, PRAP1, TUBGCP2, UTF1, VENTX, ZNF511
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv832036
Frequency
Sample Size95
Observed Gain0
Observed Loss13
Observed Complex0
Frequencyn/a


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