Variant DetailsVariant: nsv832030 Internal ID | 16109213 | Landmark | | Location Information | | Cytoband | 10q26.3 | Allele length | Assembly | Allele length | hg38 | 143379 | hg19 | 143379 | hg18 | 143379 | hg17 | 143379 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv1448842, nssv1448835, nssv1448829, nssv1448856, nssv1448859, nssv1448827, nssv1448848, nssv1448837, nssv1448833, nssv1448844, nssv1448860, nssv1448864, nssv1448863, nssv1448843, nssv1448861, nssv1448865, nssv1448831, nssv1448845, nssv1448841, nssv1448846, nssv1448854, nssv1448849, nssv1448832, nssv1448836, nssv1448852, nssv1448840, nssv1448830, nssv1448834, nssv1448855, nssv1448858, nssv1448853, nssv1448847, nssv1448838, nssv1448857 | Samples | | Known Genes | DPYSL4, JAKMIP3, STK32C | Method | BAC aCGH | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | Platform | GPL2616 | Comments | | Reference | Wong_et_al_2007 | Pubmed ID | 17160897 | Accession Number(s) | nsv832030
| Frequency | Sample Size | 95 | Observed Gain | 0 | Observed Loss | 34 | Observed Complex | 0 | Frequency | n/a |
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