Variant DetailsVariant: nsv832026![](http://dgv.tcag.ca/gb2/gbrowse_img/dgv2_hg18/?name=chr1:182051688..182228470;width=800;overview=1) Internal ID | 16109209 | Landmark | | Location Information | | Cytoband | 1q25.3 | Allele length | Assembly | Allele length | hg38 | 176783 | hg19 | 176783 | hg18 | 176783 | hg17 | 176783 |
| Variant Type | CNV gain+loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv1441547, nssv1441534, nssv1441567, nssv1441548, nssv1441579, nssv1441540, nssv1441554, nssv1441544, nssv1441577, nssv1441565, nssv1441562, nssv1441537, nssv1441545, nssv1441536, nssv1441572, nssv1441580, nssv1441555, nssv1441561, nssv1441571, nssv1441573, nssv1441550, nssv1441549, nssv1441564, nssv1441560, nssv1441578, nssv1441543, nssv1441568, nssv1441559, nssv1441576, nssv1441539, nssv1441558, nssv1441551, nssv1441557, nssv1441538, nssv1441581, nssv1441535, nssv1441553, nssv1441569, nssv1441546, nssv1441556, nssv1441575, nssv1441542, nssv1441566, nssv1441570 | Samples | | Known Genes | COLGALT2, RGL1 | Method | BAC aCGH | Analysis | Experimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold. | Platform | GPL2616 | Comments | | Reference | Wong_et_al_2007 | Pubmed ID | 17160897 | Accession Number(s) | nsv832026
| Frequency | Sample Size | 95 | Observed Gain | 4 | Observed Loss | 40 | Observed Complex | 0 | Frequency | n/a |
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