A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv832004



Internal ID16109187
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:180159367..180366405hg38UCSC Ensembl
Outerchr1:180128502..180335540hg19UCSC Ensembl
Outerchr1:178395125..178602163hg18UCSC Ensembl
Outerchr1:176860159..177067197hg17UCSC Ensembl
Cytoband1q25.2
Allele length
AssemblyAllele length
hg38207039
hg19207039
hg18207039
hg17207039
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1441531, nssv1441532, nssv1441528, nssv1441527, nssv1441526, nssv1441529
Samples
Known GenesACBD6, FLJ23867, LHX4, LOC100527964, QSOX1
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv832004
Frequency
Sample Size95
Observed Gain6
Observed Loss0
Observed Complex0
Frequencyn/a


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