A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831965



Internal ID9422816
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:100916724..101082796hg38UCSC Ensembl
Outerchr10:102676481..102842553hg19UCSC Ensembl
Outerchr10:102666471..102832543hg18UCSC Ensembl
Outerchr10:102666471..102832543hg17UCSC Ensembl
Cytoband10q24.31
Allele length
AssemblyAllele length
hg38166073
hg19166073
hg18166073
hg17166073
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1448705, nssv1448708, nssv1448707, nssv1448704, nssv1448703, nssv1448709, nssv1448710
Samples
Known GenesC10orf2, FAM178A, KAZALD1, LZTS2, MIR608, MRPL43, PDZD7, SEMA4G, SFXN3
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831965
Frequency
Sample Size95
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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