A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831929



Internal ID16455798
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:83208549..83426950hg38UCSC Ensembl
Outerchr10:84968305..85186706hg19UCSC Ensembl
Outerchr10:84958285..85176686hg18UCSC Ensembl
Outerchr10:84958285..85176686hg17UCSC Ensembl
Cytoband10q23.1
Allele length
AssemblyAllele length
hg38218402
hg19218402
hg18218402
hg17218402
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv9n68
Supporting Variantsnssv1448626, nssv1448630, nssv1448627
Samples
Known Genes
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831929
Frequency
Sample Size95
Observed Gain3
Observed Loss0
Observed Complex0
Frequencyn/a


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