A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831911



Internal ID16109094
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:73313880..73483446hg38UCSC Ensembl
Outerchr10:75073638..75243204hg19UCSC Ensembl
Outerchr10:74743644..74913210hg18UCSC Ensembl
Outerchr10:74743644..74913210hg17UCSC Ensembl
Cytoband10q22.2
Allele length
AssemblyAllele length
hg38169567
hg19169567
hg18169567
hg17169567
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1448597
Samples
Known GenesANXA7, MSS51, PPP3CB, TTC18
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831911
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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