A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831893



Internal ID16109076
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:171833310..172015860hg38UCSC Ensembl
Outerchr1:171802450..171985000hg19UCSC Ensembl
Outerchr1:170069073..170251623hg18UCSC Ensembl
Outerchr1:168534107..168716657hg17UCSC Ensembl
Cytoband1q24.3
Allele length
AssemblyAllele length
hg38182551
hg19182551
hg18182551
hg17182551
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1451261
Samples
Known GenesDNM3
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831893
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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