A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv831814



Internal ID9422665
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:167380597..167590974hg38UCSC Ensembl
Outerchr1:167349834..167560211hg19UCSC Ensembl
Outerchr1:165616458..165826835hg18UCSC Ensembl
Outerchr1:164081492..164291869hg17UCSC Ensembl
Cytoband1q24.2
Allele length
AssemblyAllele length
hg38210378
hg19210378
hg18210378
hg17210378
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1451150
Samples
Known GenesCD247, CREG1, POU2F1
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nsv831814
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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